Package: quickNmix 1.1.1
quickNmix: Asymptotic N-Mixture Model Fitting
For fitting N-mixture models using either FFT or asymptotic approaches. FFT N-mixture models extend the work of Cowen et al. (2017) <doi:10.1111/biom.12701>. Asymptotic N-mixture models extend the work of Dail and Madsen (2011) <doi:10.1111/j.1541-0420.2010.01465.x>, to consider asymptotic solutions to the open population N-mixture models. The FFT models are derived and described in "Parker, M.R.P., Elliott, L., Cowen, L.L.E. (2022). Computational efficiency and precision for replicated-count and batch-marked hidden population models [Manuscript in preparation]. Department of Statistics and Actuarial Sciences, Simon Fraser University.". The asymptotic models are derived and described in: "Parker, M.R.P., Elliott, L., Cowen, L.L.E., Cao, J. (2022). Fast asymptotic solutions for N-mixtures on large populations [Manuscript in preparation]. Department of Statistics and Actuarial Sciences, Simon Fraser University.".
Authors:
quickNmix_1.1.1.tar.gz
quickNmix_1.1.1.zip(r-4.5)quickNmix_1.1.1.zip(r-4.4)quickNmix_1.1.1.zip(r-4.3)
quickNmix_1.1.1.tgz(r-4.4-any)quickNmix_1.1.1.tgz(r-4.3-any)
quickNmix_1.1.1.tar.gz(r-4.5-noble)quickNmix_1.1.1.tar.gz(r-4.4-noble)
quickNmix_1.1.1.tgz(r-4.4-emscripten)quickNmix_1.1.1.tgz(r-4.3-emscripten)
quickNmix.pdf |quickNmix.html✨
quickNmix/json (API)
NEWS
# Install 'quickNmix' in R: |
install.packages('quickNmix', repos = c('https://mrparker909.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 3 years agofrom:bea6957df9. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 13 2024 |
R-4.5-win | OK | Nov 13 2024 |
R-4.5-linux | OK | Nov 13 2024 |
R-4.4-win | OK | Nov 13 2024 |
R-4.4-mac | OK | Nov 13 2024 |
R-4.3-win | OK | Nov 13 2024 |
R-4.3-mac | OK | Nov 13 2024 |
Exports:fitNmixfitNmixParanllpCountOpenFFT
Dependencies:codetoolsdoParallelforeachiteratorsoptimParallel
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Ancient Murrelet Chick Counts | anmu |
FUNCTION_TITLE | Ax_log |
Golden Eagle Counts Data | eagles |
Fit Asymptotic N-mixture Model | fitNmix |
Fit Asymptotic N-mixture Model Using optimParallel | fitNmixPara |
FUNCTION_TITLE | log_tp_MAT_lse |
FUNCTION_TITLE | logSubtractExp |
FUNCTION_TITLE | logSumExp |
Negative Log Likelihood | nll |
FUNCTION_TITLE | Pab |
FUNCTION_TITLE | Pab_asymptotic |
FUNCTION_TITLE | Pab_gamma |
FUNCTION_TITLE | Pab_omega |
Fit FFT N-mixture Model | pCountOpenFFT |