Package: quickNmix 1.1.1
quickNmix: Asymptotic N-Mixture Model Fitting
For fitting N-mixture models using either FFT or asymptotic approaches. FFT N-mixture models extend the work of Cowen et al. (2017) <doi:10.1111/biom.12701>. Asymptotic N-mixture models extend the work of Dail and Madsen (2011) <doi:10.1111/j.1541-0420.2010.01465.x>, to consider asymptotic solutions to the open population N-mixture models. The FFT models are derived and described in "Parker, M.R.P., Elliott, L., Cowen, L.L.E. (2022). Computational efficiency and precision for replicated-count and batch-marked hidden population models [Manuscript in preparation]. Department of Statistics and Actuarial Sciences, Simon Fraser University.". The asymptotic models are derived and described in: "Parker, M.R.P., Elliott, L., Cowen, L.L.E., Cao, J. (2022). Fast asymptotic solutions for N-mixtures on large populations [Manuscript in preparation]. Department of Statistics and Actuarial Sciences, Simon Fraser University.".
Authors:
quickNmix_1.1.1.tar.gz
quickNmix_1.1.1.zip(r-4.7-any)quickNmix_1.1.1.zip(r-4.6-any)quickNmix_1.1.1.zip(r-4.5-any)
quickNmix_1.1.1.tgz(r-4.6-any)quickNmix_1.1.1.tgz(r-4.5-any)
quickNmix_1.1.1.tar.gz(r-4.7-any)quickNmix_1.1.1.tar.gz(r-4.6-any)
quickNmix_1.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
quickNmix/json (API)
| # Install 'quickNmix' in R: |
| install.packages('quickNmix', repos = c('https://mrparker909.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:bea6957df9. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 154 | ||
| source / vignettes | OK | 223 | ||
| linux-release | OK | 155 | ||
| macos-release | OK | 162 | ||
| macos-oldrel | OK | 201 | ||
| windows-devel | OK | 79 | ||
| windows-release | OK | 76 | ||
| windows-oldrel | OK | 69 | ||
| wasm-release | OK | 87 |
Exports:fitNmixfitNmixParanllpCountOpenFFT
Dependencies:codetoolsdoParallelforeachiteratorsoptimParallel
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Ancient Murrelet Chick Counts | anmu |
| FUNCTION_TITLE | Ax_log |
| Golden Eagle Counts Data | eagles |
| Fit Asymptotic N-mixture Model | fitNmix |
| Fit Asymptotic N-mixture Model Using optimParallel | fitNmixPara |
| FUNCTION_TITLE | log_tp_MAT_lse |
| FUNCTION_TITLE | logSubtractExp |
| FUNCTION_TITLE | logSumExp |
| Negative Log Likelihood | nll |
| FUNCTION_TITLE | Pab |
| FUNCTION_TITLE | Pab_asymptotic |
| FUNCTION_TITLE | Pab_gamma |
| FUNCTION_TITLE | Pab_omega |
| Fit FFT N-mixture Model | pCountOpenFFT |
